whole genome HG38 variant annotation with pipeline on annovar #bioinformatics #genomics #shell #linu
https://github.com/cdesterke/annovar_hg38 Shell script which allow to pip variant annotation on new version of human genome HG38
Overall survival pronostic gene signature by LASSO penalization on transcriptome data #LASSO #R #pro
select gene variables in transcriptomic high dimension data by LASSO penalization on survival data. Select best predictive gene signature...
Pronostic score IPSS-R for myelodysplastic syndrome #python #leukemia #pronostic
This is a software in Python version 3 script in order to evaluate international pronostic score revised 2012 version taking in account...
Basic retro programming by C64 emulation in VICE
Commodore c64 under vice emulator ! Basic retro programming from the 80's !
Nice violin plot for single cell sequencing #tutorial #R #singlecell #NGS
#NICE violin plot library(ggplot2) library((ggbeeswarm) p<-ggplot(set, aes(x=group, y=quanti, color=group,size=7)) ...
whole genome annotation of refseq genes on human genome HG19 version: aCGH #genomics
https://github.com/cdesterke/aCGHarrayDirectHG19 software for genomic annotations on HG19 version of human genome for aCGH experiment...
Tutorial Circlize your 2D index matrix #R #datascience #Circos plot
R-package circlize on 2D index matrix data from used matrix 2D index
bodymass calculator and database formation with results
bodysmart_database https://github.com/cdesterke/bodysmart_database/ bodysmart is a interactive python program which allowed to calculate...
Compilation of minimal R-package under ubuntu
#update and upgrade the system > sudo apt-get update > sudo apt-get upgrade #install R > sudo apt-get install r-base #install R...
repository of gene2bcp.sh on github #metabolism #omics
https://github.com/cdesterke/gene2bcp gene2bcp software allow to annotate a human gene symbol list with implication in metabolism...