Mutation landscape plot on breast cancer subgroup #cancer #mutations #breastcancer #oncoprint

library(GenVisR)

head(data) sample gene_name trv_type amino.acid.change 1 2 PTEN splice_region e7-3 2 2 PTEN frame_shift_ins p.P248fs 3 2 MAP3K1 frame_shift_del p.S822fs 4 2 MALAT1 rna NULL 5 2 MED12 missense p.S1892F 6 4 RUNX1 frame_shift_ins p.W457fs waterfall(data, fileType="MGI", mainXlabel=TRUE, mainLabelCol="amino.acid.change", mainLabelSize=2)

data from PMID: 26563128